
Protein bagels in the air fryer have become my favorite way to enjoy a warm chewy breakfast without spending hours in the kitchen. These use only three main ingredients and offer a big boost of morning energy while staying light on calories. You get fresh bagels in less than half an hour with endless topping options and minimal cleanup.
The first time I made these protein bagels I could not believe how easy it was and now my homemade bagels are always a hit for Sunday brunch or quick school lunches.
Ingredients
- All purpose flour: brings classic bagel texture and balances the moisture from the cottage cheese Look for freshly milled or unbleached flour for best results
- Baking powder: helps the bagels puff up giving them a soft tender crumb Always check your baking powder is fresh for best rise
- Cottage cheese: adds loads of protein and moisture making these extra tender Full fat or low fat both work but full fat gives an even richer flavor
- Egg: adds shine and helps toppings stick This is optional but gives a classic look
- Toppings: like everything bagel blend poppy seeds or sesame seeds add crunch and flavor Choose fresh seeds for maximum aroma and toast if you like extra nuttiness
Step-by-Step Instructions
- Mix the Dry Ingredients:
- Combine flour and baking powder in a medium bowl Sprinkle in a little salt for flavor if you wish
- Make the Dough:
- Create a well in the center of your flour and add cottage cheese Mix thoroughly with a fork or rubber spatula until a rough dough forms You can also use a stand mixer with a dough hook here
- Knead the Dough:
- Transfer to a well floured surface and knead by hand for one to two minutes until a semi smooth ball forms The dough should be barely sticky Add flour as needed to keep the dough workable
- Shape the Bagels:
- Divide dough evenly into four pieces Roll each piece into a six to seven inch log about three quarters of an inch thick Connect the ends to shape a bagel Repeat with all sections
- Egg Wash and Add Toppings:
- Whisk egg with a splash of water or milk Use a brush to coat each bagel lightly Add your favorite toppings now pressing gently so they stick
- Air Fry the Bagels:
- Preheat air fryer to three hundred degrees Fahrenheit Arrange bagels in a single layer on parchment or spray basket with cooking spray Cook for fifteen to seventeen minutes checking at ten minutes to see progress Bagels should be golden and set when done
- Cool and Serve:
- Remove the bagels and let them cool on a wire rack for fifteen minutes before slicing and eating This keeps the centers fluffy and lets the crust firm up

My favorite part about these bagels is using everything seasoning which fills the kitchen with a savory aroma I once made these with my kids and we spent an afternoon creating fun topping combos like cinnamon sugar and cheddar the options were endless
Storage Tips
Keep leftover bagels in a tightly sealed container in the fridge for up to five days For longer storage freeze them in a freezer safe bag for up to three months To reheat pop them in your toaster or air fryer straight from the fridge or give them a gentle blast in the microwave if you are in a hurry Bagels defrost best overnight in the fridge
Ingredient Substitutions
You can swap in whole wheat flour or gluten free flour mix and still get a lovely texture If you need dairy free try a thick plant based yogurt in place of cottage cheese but you may need to adjust the flour a bit Egg wash is completely optional just brush with a touch of nondairy milk instead if desired

Serving Suggestions
Enjoy these bagels warm with whipped cream cheese smoked salmon or even mashed avocado They make a quick breakfast sandwich layered with eggs and veggies or a satisfying snack with nut butter and berries They are just as tasty plain straight from the air fryer
Cultural Touch
Bagels have long been loved as a staple in many cultures but protein bagels are a modern take that fits busy mornings and active lifestyles I love sharing this recipe with friends who want homemade flavor without spending hours on traditional dough rises
Recipe FAQs
- → Can I use gluten-free flour for these bagels?
Yes, you can substitute cup-for-cup gluten-free flour to make these bagels gluten-free without needing any other changes.
- → What toppings work best?
Try everything seasoning, poppy seeds, or sesame seeds for added flavor and crunch.
- → Can I bake these in an oven instead of an air fryer?
Yes, bake at 375°F for 20-25 minutes, checking for a golden brown color and firm texture.
- → How should I store leftover bagels?
Keep them in an airtight container in the refrigerator for up to 5 days, or freeze for up to 3 months.
- → Is the egg wash necessary?
No, the egg is optional but helps with browning and helps toppings stick to the bagels.
- → Can I use a stand mixer for the dough?
Yes, use a dough hook attachment to mix and knead the dough until it comes together smoothly.